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- Error installing rjava in r how to#
- Error installing rjava in r install#
- Error installing rjava in r iso#
Updating Java configuration in /usr/lib/R JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux
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Java library path: $(JAVA_HOME)/lib/server Gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/java-11-oracle/lib/server -ljvm -L/usr/lib/R/lib -lR fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conftest.c -o conftest.o Gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/jvm/java-11-oracle/include -I/usr/lib/jvm/java-11-oracle/include/linux -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. Java home path : /usr/lib/jvm/java-11-oracleĭetected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linuxĭetected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Then configuring R by typeing sudo R CMD javareconf but it didn't seem to work: *** JAVA_HOME is not a valid path, ignoring I tried setting java-11-oracle to default using sudo update-alternatives -config java and updating JAVA_HOME using sudo nano /etc/environment, echo $JAVA_HOME gives: $ echo $JAVA_HOME Installation of package ‘rJava’ had non-zero exit status Warning in system(cmd) : error in running commandĮRROR: configuration failed for package ‘rJava’ Make sure you have configured R with Java support (see R documentation) and check config.log for failure reason. configure: error: Unable to run a simple JNI program. yesĬhecking whether JNI programs can be compiled. Java libs : '-L/usr/lib/jvm/java-11-oracle/lib/server -ljvm'Ĭhecking whether Java run-time works. yesĬpp flags : '-I/usr/lib/jvm/java-11-oracle/include -I/usr/lib/jvm/java-11-oracle/include/linux' yesĬhecking whether siglongjmp is declared. yesĬhecking whether sigsetjmp is declared. yesĬonfigure: checking whether gcc -std=gnu99 supports static inline.Ĭhecking whether setjmp.h is POSIX.1 compatible. yesĬhecking whether time.h and sys/time.h may both be included. yesĬhecking for an ANSI C-conforming const. bin/grepĬhecking for sys/wait.h that is POSIX.1 compatible. gcc -std=gnu99 -EĬhecking for grep that handles long lines and -e.
Error installing rjava in r how to#
none neededĬhecking how to run the C preprocessor.
Error installing rjava in r iso#
yesĬhecking for gcc -std=gnu99 option to accept ISO C89. yesĬhecking whether gcc -std=gnu99 accepts -g. noĬhecking whether we are using the GNU C compiler. a.outĬhecking whether we are cross compiling. yesĬhecking for C compiler default output file name. ** package ‘rJava’ successfully unpacked and MD5 sums checkedĬhecking whether the C compiler works. Installing package into ‘/home/tj/R/x86_64-pc-linux-gnu-library/3.6’Ĭontent type 'application/x-gzip' length 675188 bytes (659 KB) When I ran install.packages("rJava") from within R I got the following error message: install.packages("rJava") R-cran-rjava is already the newest version (0.9-11-1cran1ppabionic0).Ġ to upgrade, 0 to newly install, 0 to remove and 0 not to upgrade.
Error installing rjava in r install#
r-cran-rjava now looks like its installed correctly: $ sudo apt install r-cran-rjava Sudo apt install r-cran-rjava had a dependency issue that seemed to be fixed by adding the DebianBuster repository.
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Initially I tried sudo apt install r-cran-rjava followed by install.packages("rJava") I've searched for similar questions but the answers provided don't seem to have worked for me. I'm trying to install the rJava package in R 3.6.1 on Ubuntu 18.04.